Veto

Functions to manage the veto files that avoid multiple fatal-ending trials. Whenever a processing step ends with the same error more than twice for a given sequence, that sequence is vetoed and manual intervention in needed to solve the issue.

Reference/API

osa.veto Module

Handle the list of closed and vetoed sequences.

Functions

failed_history(history_file)	Check if a processing step has failed twice in a given history file.
get_veto_list(sequence_list)	Get a list of vetoed sequences.
get_closed_list(sequence_list)	Get the list of closed sequences.
set_veto_action(name, sequence_list)	Set the action for a given sequence to veto.
set_closed_action(name, sequence_list)	Set the action of a closed sequence object.
update_vetoes(sequence_list)	Create a .veto file for a given sequence if reached maximum number of trials.
set_closed_sequence(sequence)	Creates a .closed lock file for a given sequence.